vefart.blogg.se - R generate null vector

ensembl_type: Determine if ensembl id is a Protein, gene, or transcript_id.dist_calc: Internal function that computes the mean/stdev for each gene.detect_inputtype: Determine which format of gene is used to specify by.crosstalk_subgraph: Helper function to generate subgraph from crosstalk_df output.crosstalkr: crosstalkr: A package for the identification of functionally.compute_null_dnp: function to compute null distribution of dnp.compute_np: main function to compute np from a user-provided expression.compute_dnp: main function to compute delta np for every gene in a given.compute_crosstalk: Identify proteins with a statistically significant.combine function for compute_null foreach looping structure

check_crosstalk: Check to make sure incoming object is a valid crosstalk df.calc_np_i: helper function to calculate np for one sample.calc_np_all_legacy: function to calculate the network potential for each protein.

calc_np_all: function to calculate the network potential for each protein.

calc_np: calculate network potential for one node.

calc_dnp_i: helper function to calculate dnp for one sample.

bootstrap_null: Bootstrap null distribution for RWR.

as_gene_symbol: Convert from most other representations of gene name to.

add_value: Attach a generic user-provided value to graph.

add_expression: attach expression values from user-provided expression vector.